Publications

Peer-reviewed journals

Detection of Hepatocellular Carcinoma in a High-Risk Population by a Mass Spectrometry-Based Test

D. Mahalingam, L. Chelis, I. Nizamuddin, S. S. Lee, S. Kakolyris, G. Halff, K. Washburn, K. Attwood, I. Fahad, J. Grigorieva, S. Asmellash, K. Meyer, C. Oliveira, H. Roder, J. Roder, R. Iyer

Cancers 13, 3109 (2021)

doi: 10.3390/cancers13133109
A serum protein classifier that identifies patients with advanced non-small cell lung cancer who derive clinical benefit from treatment with immune checkpoint inhibitors

JM. Muller, K. Hummelink, D. Hurkmans, AL. Niemeijer, K. Monkhorst, J. Roder, C. Oliveira, H. Roder, J. Aerts, E. Smit

Clinical Cancer Research 26 (19): 5188-5197 (2020)

doi: 10.1158/1078-0432.CCR-20-0538
A proposal for score assignment to characterize biological processes from mass spectral analysis of serum

J. Roder, L. Neta, C. Oliveira, K. Meyer, S. Asmellash. S. Kasimir-Bauer, H. Pass, J. Weber, H. Roder, J. Grigorieva

Clinical Mass Spectrometry 18 13-26 (2020)

doi: 10.1016/j.clinms.2020.09.001
Application of Protein Set Enrichment Analysis to Correlation of Protein Functional Sets with Mass Spectral Features and Multivariate Proteomic Tests

J. Grigorieva, S. Asmellash, C. Oliveira, H. Roder, L. Net, J. Roder

Clinical Mass Spectrometry 15 (2020) 44-53

doi: 10.1016/j.clinms.2019.09.001
A Dropout-Regularized Classifier Development Approach Optimized for Precision Medicine Test Discovery from Omics Data

J. Roder, C. Oliveira, L. Net, M. Tsypin, B. Linstid, H. Roder

BMC Bioinformatics 20:325 (2019)

doi: 10.1186/s12859-019-2922-2
Robust Identification of Molecular Phenotypes using Semi-Supervised Learning

H. Roder, C. Oliveira, L. Net, B. Linstid, M. Tsypin, J. Roder

BMC Bioinformatics 20:273 (2019)

doi: 10.1186/s12859-019-2885-3
Improving the power of gene set enrichment analyses

J. Roder, B. Linstid, C. Oliveira

BMC Bioinformatics 20:257 (2019)

doi: 10.1186/s12859-019-2850-1
Proteomic test for anti-PD-1 checkpoint blockade treatment of metastatic melanoma with and without BRAF mutations

P. Ascierto, M. Capone, A. Grimaldi, D. Mallardo, E. Simeone, G. Madonna, H. Roder, K. Meyer, S. Asmellash, C. Oliveira, J. Roder, J. Grigorieva

JITC 7 (2019)

doi: 10.1186/s40425-019-0569-1
A serum protein signature associated with outcome after anti-PD1 therapy in metastatic melanoma

J. Weber, M. Sznol, R, Sullivan, S, Blackmon, G. Boland, H. Kluger, R. Halaban, A. Bacchiocchi, P. Ascierto, M, Capone, C. Oliveira, K, Meyer, J. Grigorieva, S. Asmellash, J, Roder, H, Roder

Journal of Clinical Oncology 6 (2018) 79 – 86

doi: 10.1158/2326-6066.CIR-17-0412
Simulation of gain stability of THGEM gas-avalanche particle detectors

P. M. M. Correia, M. Pitt, C. D. R. Azevedo, A. Breskin, S. Bressier, C. A. B. Oliveira, A. L. M. Silva, R. Veenhof, J. F. C. A. Veloso

JINST 13 (2018) P01015

doi: 10.1088/1748-0221/13/01/P01015
Microscopic simulation of xenon-based optical TPCs in the presence of molecular additives

The Next Collaboration

Nuclear Instruments and Methods A 877 (2018) 157 – 172

doi: 10.1016/j.nima.2017.08.049
Radiopurity assessment of the tracking readout for the NEXT double beta decay experiment

The Next Collaboration

Journal of Instrumentation 10 (2015) P05006

doi: 10.1088/1748-0221/10/05/P05006
Ionization and scintillation of nuclear recoils in gaseous xenon

The Next Collaboration

Nuclear Instruments and Methods A 793 (2015) 62 – 74

doi: 10.1016/j.nima.2015.04.057
An improved measurement of electron-ion recombination in high-pressure xenon gas

The Next Collaboration

Journal of Instrumentation 10 (2015) P03025

doi: 10.1088/1748-0221/10/03/P03025
Characterization of NEXT-DEMO using xenon K$_alpha$ X-rays

The Next Collaboration

Journal of Instrumentation 9 (2014) P10007

doi:10.1088/1748-0221/9/10/P10007
A dynamic method for charging-up calculations: the case of GEM

P. M. M. Correia, C. A. B. Oliveira, C. D. R. Azevedo, A. L. M. Silva, R Veenhof, M. Varun Nemallapudic, J. F. C. A. Veloso

Journal of Instrumentation 9 (2014) P07025

doi: 10.1088/1748-0221/9/07/P07025
Characterization of a medium size Xe/TMA TPC instrumented with microbulk Micromegas, using low-energy gamma-rays

The Next Collaboration

Journal of Instrumentation 9 (2014) C04015

doi: 10.1088/1748-0221/9/04/C04015
Description and commissioning of NEXT-MM prototype: first results from operation in a Xenon-Trimethylamine gas mixture

The Next Collaboration

Journal of Instrumentation 9 (2014) P03010

doi: 10.1088/1748-0221/9/03/P03010
Present status and future perspectives of the NEXT experiment

The Next Collaboration

Advances in High Energy Physics, 2014

doi: 10.1155/2014/907067
Characteristics of a robust and portable large area X-ray fluorescence imaging system

R. G. Figueroa, E. Lozano , F. Belmar, D. Alcaman, A. von Bohlen, C. A. B. Oliveira, A. L. M. Silva, J. F. C. A. Veloso

X-Ray Spectrometry 43 (2014) 126

doi:10.1002/xrs.2527
Operation and first results of the NEXT-DEMO prototype using a silicon photomultiplier tracking array

The Next Collaboration

Journal of Instrumentation 8 (2013) P09011

doi:10.1088/1748-0221/8/09/P09011
Radiopurity control in the NEXT-100 double beta decay experiment: procedures and initial measurements

The Next Collaboration

Journal of Instrumentation 8 (2013) T01002

doi:10.1088/1748-0221/8/01/T01002
Ionization and scintillation response of high-pressure xenon gas to alpha particles

The Next Collaboration

Journal of Instrumentation 8 (2013) P05025

doi: 10.1088/1748-0221/8/05/P05025
Simulation of gaseous Ar and Xe electroluminescence in the Near Infra-Red range

C. A. B. Oliveira, A. L. Ferreira, S. Biagi, R. Veenhof, J. F. C. A. Veloso

Nuclear Instruments and Methods A 722 (2013) 1 – 4

doi: 10.1016/j.nima.2013.04.061
Design and characterization of the SiPM tracking system of NEXT-DEMO, a demonstrator prototype of the NEXT-100 experiment

The Next Collaboration

Journal of Instrumentation 8 (2013) T05002

doi: 10.1088/1748-0221/8/05/T05002
Initial results of NEXT-DEMO, a large-scale prototype of the NEXT-100 experiment

The Next Collaboration

Journal of Instrumentation 8 (2013) P04002

doi:10.1088/1748-0221/8/04/P04002
Near-Intrinsic Energy Resolution for 30–662 keV gamma rays in a high pressure xenon electroluminescent TPC

The Next Collaboration

Nuclear Instruments and Methods A, 708 (2013) 101–104

doi: 10.1016/j.nima.2012.12.123
Simulation of VUV electroluminescence in micropattern gaseous detectors: the case of GEM and MHSP

C. A. B. Oliveira, P. M. M. Correia, H. Schindler, A. L. Ferreira, C. M. B. Monteiro, J. M. F. dos Santos, S. Biagi, R. Veenhof, J. F. C. A. Veloso

Journal of Instrumentation 7 (2012) P09006

doi: 10.1088/1748-0221/7/09/P09006
NEXT-100 Technical Design Report (TDR). Executive Summary

The Next Collaboration

Journal of Instrumentation 7 (2012) T06001

doi: 10.1088/1748-0221/7/06/T06001
SiPMs coated with TPB: coating protocol and characterization for NEXT

The Next Collaboration

Journal of Instrumentation 7 (2012) P02010

doi: 10.1088/1748-0221/7/02/P02010
THGEM-based detectors for sampling elements in DHCAL: laboratory and beam evaluation

L. Arazi, H. Natal da Luz, D. Freytag, M. Pitt, C. D. R. Azevedo, A. Rubin, M. Cortesi, D. S. Covita, C. A. B. Oliveira, E. Oliveri, R. Herbst, S. Park, J. Yu, R. Chechik, J. M. F. dos Santos, M. Breidenbach, G. Haller, A. White, J. F. C. A. Veloso and A. Breskin

Journal of Instrumentation 7 (2012) C05011

doi: 10.1088/1748-0221/7/05/C05011
Multi-slice Quantum Computed Tomography System using a MHSP

L. F. N. D. Carramate, C. A. B. Oliveira, A. L. M. Silva, A. M. da Silva, J. M. F. dos Santos, J. F. C. A. Veloso

Journal of Instrumentation 7 (2012) C01106

doi: 10.1088/1748-0221/7/01/C01106
Secondary Scintillation Yield from GEM and THGEM Gaseous Electron Multipliers for direct Dark Matter search

C. M. B. Monteiro, L. M. P. Fernandes, J. F. C. A. Veloso, C. A. B. Oliveira, J. M. F. dos Santos

Physics Letters B 714 (2012) 18 - 23

doi: 10.1016/j.physletb.2012.06.066
A simulation toolkit for electroluminescence assessment in rare event experiments

C. A. B. Oliveira, H. Schindler, R. Veenhof, S. Biagi, C. M. B. Monteiro, J. M. F. dos Santos, A. L. Ferreira, J. F. C. A. Veloso

Physics Letters B 703 (2011) 217 - 222

doi: 10.1016/j.physletb.2011.07.081
Energy resolution studies for NEXT

C. A. B. Oliveira, M. Sorel, J. Martin-Albo, J. J. Gomez-Cadenas, A. L. Ferreira and J. F. C. A. Veloso

Journal of Instrumentation 6 (2011) P05007

doi: 10.1088/1748-0221/6/05/P05007
Characterization of an energy dispersive X-ray fluorescence imaging system based on a Micropattern Gaseous Detector

A. L. M. Silva, C. D. R. Azevedo, C. A. B. Oliveira, J. M. F. Dos Santos, M. L. Carvalho, J. F. C. A. Veloso

Spectrochimica Acta B 66 (2011) 308 – 313

doi: 10.1016/j.sab.2011.03.002
Energy weighting technique in Quantum Computed Tomography using a MPGD

L. F. N. D. Carramate, C. A. B. Oliveira, A. L. M. Silva, A. M. da Silva, J. M. F. dos Santos, J. F. C. A. Veloso

Journal of Instrumentation 6 (2011) C02002

doi: 10.1088/1748-0221/6/02/C02002
Energy Weighting in a 2D-MHSP x-ray Single Photon Detector

C. A. B. Oliveira, C. A. Santos, A. L. M. Silva, J.M.F. dos Santos, J.F.C.A. Veloso

IEEE Transactions on Nuclear Science 57 (2010) 938 – 94

doi: 10.1109/TNS.2010.2044806
Energy resolved X-ray fluorescence imaging based on a micropattern gas detector

J. F. C. A. Veloso, A. L. M. Silva, C. A. B. Oliveira, A. L. Gouvea, C. D. R. Azevedo, H. Natal da Luz, J.M.F. dos Santos

Spectrochimica Acta B 65 (2010) 241 – 247

doi: 10.1016/j.sab.2010.03.006
EDXRF imaging of Pb in glazed ceramics using a micropattern gas detector

A. L. M. Silva, C. A. B. Oliveira, A. L. Gouvea, J. M. F. dos Santos, M. L. Carvalho, J. F. C. A. Veloso

Analytical & Bioanalytical Chemistry 395 (2009) 2073 – 2080

doi: 10.1007/s00216-009-3196-8
Gas VUV Photosensors Operating Face-to-Face

J. F. C. A. Veloso, C. D. R. Azevedo, C. A. B. Oliveira, H. N. da Luz, A.L. Ferreira, J. M. F. dos Santos

Nuclear Intruments and Methods in Physics Research A 610 (2009) 238 – 241

doi: 10.1016/j.nima.2009.05.146
Single photon counting x-ray imaging system using a Micro Hole and Strip Plate

H. N. da Luz, C. A. B. Oliveira, C. D. R. Azevedo, J. A. Mir, J. M. F. dos Santos, J. F. C. A. Veloso

IEEE Transactions on Nuclear Science 55 (2008) 2341 – 2345

doi: 10.1109/TNS.2008.2001423
High-Rate Operation of the Micro-Hole & Strip Plate Gas Detector

J. F. C. A. Veloso, C. C. Caldas, C. A. B. Oliveira, C. D. R. Azevedo, J. M. F. dos Santos, A. Breskin, R. Chechik

Nuclear Instruments and Methods A 580 (2007) 362 – 365

doi: 10.1016/j.nima.2007.05.179

Proceedings of scientific meetings

Measurement of scintillation and ionization yield with high-pressure gaseous mixtures of Xe and TMA for improved neutrinoless double beta decay and dark matter searches

Y. Nakajima, A. Goldschmidt, H. S. Matis, D. Nygren, C. A. B. Oliveira, J. Renner

7th Symposium on large TPCs for low energy rare event detection, Paris, France, Dec 15 - 17 2014

Journal of Physics: Conference Series 650 (2015) 012012

doi:10.1088/1742-6596/650/1/012012
Measurements of charge and light in Pure High Pressure Xe towards the study of Xe+TMA mixtures with Dark Matter directionality sensitivity and supra-intrinsic energy resolution for neutrino-less double beta decay searches

C. A. B. Oliveira, V. M. Gehman, A. Goldschmidt, D. Nygren, J. Renner

13th International Conference on Topics in Astroparticle and Underground Physics, Asilomar, CA, USA, Sep 8 - 13 2013

Physics Procedia 61 (2015) 742

doi:10.1016/j.phpro.2014.12.093
Results from the NEXT prototypes

C. A. B. Oliveira, on behalf of The Next Collaboration

6th Symposium on large TPCs for low energy rare event detection, Paris, France, Dec 17 –19 2012.

Journal of Physics: Conference Series 460 (2013) 012011

doi:10.1088/1742-6596/460/1/012011
The NEXT experiment at the LSC

C. A. B. Oliveira, A. L. Ferreira and J. F. C. A. Veloso, J. Mart'{in-Albo, M. Sorel, J. J. G'{omez-Cadenas, on behalf of The Next Collaboration

13th ICATPP Conference on Astroparticle, Particle, Space Physics and Detectors for Physics Applications, Villa Olmo, Como, Italy, Oct 3 – 7 2011

Astroparticle, Particle, Space Physics and Detectors for Physics Applications, Chapter 58, 377 - 382, World Scientific

doi: 10.1142/9789814405072_0055
Energy Weighting in a 2D-MHSP x-ray Single Photon Detector

C. A. B. Oliveira, C. A. Santos, A. L. M. Silva, J. M. F. Dos Santos, J. F. C. A. Veloso

2008 IEEE NSS/MIC, Dresden, Germany, Oct 19 - 25 2008

IEEE NSS/MIC Record (2008) 3986 – 3990

doi:10.1109/NSSMIC.2008.4774156
Simulation Method for Position and Energy Corrections in Scintillation Detectors

C. A. B. Oliveira, C. D. R. Azevedo, A. L. Ferreira, J. F. C. A. Veloso

WMISI: Workshop on Medical Instrumentation Signal and Imaging, Aveiro, Portugal, Apr 11 - 12 2007

http://biblioteca.sinbad.ua.pt/Revistas/2007000304/019