Publications
============
Peer-reviewed journals
----------------------
* | *Detection of Hepatocellular Carcinoma in a High-Risk Population by a Mass Spectrometry-Based Test*
| D. Mahalingam, L. Chelis, I. Nizamuddin, S. S. Lee, S. Kakolyris, G. Halff, K. Washburn, K. Attwood, I. Fahad, J. Grigorieva, S. Asmellash, K. Meyer, C. Oliveira, H. Roder, J. Roder, R. Iyer
| Cancers 13, 3109 (2021)
| doi: 10.3390/cancers13133109
* | *A serum protein classifier that identifies patients with advanced non-small cell lung cancer who derive clinical benefit from treatment with immune checkpoint inhibitors*
| JM. Muller, K. Hummelink, D. Hurkmans, AL. Niemeijer, K. Monkhorst, J. Roder, C. Oliveira, H. Roder, J. Aerts, E. Smit
| Clinical Cancer Research 26 (19): 5188-5197 (2020)
| doi: 10.1158/1078-0432.CCR-20-0538
* | *A proposal for score assignment to characterize biological processes from mass spectral analysis of serum*
| J. Roder, L. Neta, C. Oliveira, K. Meyer, S. Asmellash. S. Kasimir-Bauer, H. Pass, J. Weber, H. Roder, J. Grigorieva
| Clinical Mass Spectrometry 18 13-26 (2020)
| doi: 10.1016/j.clinms.2020.09.001
* | *Application of Protein Set Enrichment Analysis to Correlation of Protein Functional Sets with Mass Spectral Features and Multivariate Proteomic Tests*
| J. Grigorieva, S. Asmellash, C. Oliveira, H. Roder, L. Net, J. Roder
| Clinical Mass Spectrometry 15 (2020) 44-53
| doi: 10.1016/j.clinms.2019.09.001
* | *A Dropout-Regularized Classifier Development Approach Optimized for Precision Medicine Test Discovery from Omics Data*
| J. Roder, C. Oliveira, L. Net, M. Tsypin, B. Linstid, H. Roder
| BMC Bioinformatics 20:325 (2019)
| doi: 10.1186/s12859-019-2922-2
* | *Robust Identification of Molecular Phenotypes using Semi-Supervised Learning*
| H. Roder, C. Oliveira, L. Net, B. Linstid, M. Tsypin, J. Roder
| BMC Bioinformatics 20:273 (2019)
| doi: 10.1186/s12859-019-2885-3
* | *Improving the power of gene set enrichment analyses*
| J. Roder, B. Linstid, C. Oliveira
| BMC Bioinformatics 20:257 (2019)
| doi: 10.1186/s12859-019-2850-1
* | *Proteomic test for anti-PD-1 checkpoint blockade treatment of metastatic melanoma with and without BRAF mutations*
| P. Ascierto, M. Capone, A. Grimaldi, D. Mallardo, E. Simeone, G. Madonna, H. Roder, K. Meyer, S. Asmellash, C. Oliveira, J. Roder, J. Grigorieva
| JITC 7 (2019)
| doi: 10.1186/s40425-019-0569-1
* | *A serum protein signature associated with outcome after anti-PD1 therapy in metastatic melanoma*
| J. Weber, M. Sznol, R, Sullivan, S, Blackmon, G. Boland, H. Kluger, R. Halaban, A. Bacchiocchi, P. Ascierto, M, Capone, C. Oliveira, K, Meyer, J. Grigorieva, S. Asmellash, J, Roder, H, Roder
| Journal of Clinical Oncology 6 (2018) 79 -- 86
| doi: 10.1158/2326-6066.CIR-17-0412
* | *Simulation of gain stability of THGEM gas-avalanche particle detectors*
| P. M. M. Correia, M. Pitt, C. D. R. Azevedo, A. Breskin, S. Bressier, C. A. B. Oliveira, A. L. M. Silva, R. Veenhof, J. F. C. A. Veloso
| JINST 13 (2018) P01015
| doi: 10.1088/1748-0221/13/01/P01015
* | *Microscopic simulation of xenon-based optical TPCs in the presence of molecular additives*
| `The Next Collaboration `_
| Nuclear Instruments and Methods A 877 (2018) 157 -- 172
| doi: 10.1016/j.nima.2017.08.049
* | *Radiopurity assessment of the tracking readout for the NEXT double beta decay experiment*
| `The Next Collaboration `_
| Journal of Instrumentation 10 (2015) P05006
| doi: 10.1088/1748-0221/10/05/P05006
* | *Ionization and scintillation of nuclear recoils in gaseous xenon*
| `The Next Collaboration `_
| Nuclear Instruments and Methods A 793 (2015) 62 -- 74
| doi: 10.1016/j.nima.2015.04.057
* | *An improved measurement of electron-ion recombination in high-pressure xenon gas*
| `The Next Collaboration `_
| Journal of Instrumentation 10 (2015) P03025
| doi: 10.1088/1748-0221/10/03/P03025
* | *Characterization of NEXT-DEMO using xenon K$_\alpha$ X-rays*
| `The Next Collaboration `_
| Journal of Instrumentation 9 (2014) P10007
| doi:10.1088/1748-0221/9/10/P10007
* | *A dynamic method for charging-up calculations: the case of GEM*
| P. M. M. Correia, C. A. B. Oliveira, C. D. R. Azevedo, A. L. M. Silva, R Veenhof, M. Varun Nemallapudic, J. F. C. A. Veloso
| Journal of Instrumentation 9 (2014) P07025
| doi: 10.1088/1748-0221/9/07/P07025
* | *Characterization of a medium size Xe/TMA TPC instrumented with microbulk Micromegas, using low-energy gamma-rays*
| `The Next Collaboration `_
| Journal of Instrumentation 9 (2014) C04015
| doi: 10.1088/1748-0221/9/04/C04015
* | *Description and commissioning of NEXT-MM prototype: first results from operation in a Xenon-Trimethylamine gas mixture*
| `The Next Collaboration `_
| Journal of Instrumentation 9 (2014) P03010
| doi: 10.1088/1748-0221/9/03/P03010
* | *Present status and future perspectives of the NEXT experiment*
| `The Next Collaboration `_
| Advances in High Energy Physics, 2014
| doi: 10.1155/2014/907067
* | *Characteristics of a robust and portable large area X-ray fluorescence imaging system*
| R. G. Figueroa, E. Lozano , F. Belmar, D. Alcaman, A. von Bohlen, C. A. B. Oliveira, A. L. M. Silva, J. F. C. A. Veloso
| X-Ray Spectrometry 43 (2014) 126
| doi:10.1002/xrs.2527
* | *Operation and first results of the NEXT-DEMO prototype using a silicon photomultiplier tracking array*
| `The Next Collaboration `_
| Journal of Instrumentation 8 (2013) P09011
| doi:10.1088/1748-0221/8/09/P09011
* | *Radiopurity control in the NEXT-100 double beta decay experiment: procedures and initial measurements*
| `The Next Collaboration `_
| Journal of Instrumentation 8 (2013) T01002
| doi:10.1088/1748-0221/8/01/T01002
* | *Ionization and scintillation response of high-pressure xenon gas to alpha particles*
| `The Next Collaboration `_
| Journal of Instrumentation 8 (2013) P05025
| doi: 10.1088/1748-0221/8/05/P05025
* | *Simulation of gaseous Ar and Xe electroluminescence in the Near Infra-Red range*
| C. A. B. Oliveira, A. L. Ferreira, S. Biagi, R. Veenhof, J. F. C. A. Veloso
| Nuclear Instruments and Methods A 722 (2013) 1 -- 4
| doi: 10.1016/j.nima.2013.04.061
* | *Design and characterization of the SiPM tracking system of NEXT-DEMO, a demonstrator prototype of the NEXT-100 experiment*
| `The Next Collaboration `_
| Journal of Instrumentation 8 (2013) T05002
| doi: 10.1088/1748-0221/8/05/T05002
* | *Initial results of NEXT-DEMO, a large-scale prototype of the NEXT-100 experiment*
| `The Next Collaboration `_
| Journal of Instrumentation 8 (2013) P04002
| doi:10.1088/1748-0221/8/04/P04002
* | *Near-Intrinsic Energy Resolution for 30--662 keV gamma rays in a high pressure xenon electroluminescent TPC*
| `The Next Collaboration `_
| Nuclear Instruments and Methods A, 708 (2013) 101--104
| doi: 10.1016/j.nima.2012.12.123
* | *Simulation of VUV electroluminescence in micropattern gaseous detectors: the case of GEM and MHSP*
| C. A. B. Oliveira, P. M. M. Correia, H. Schindler, A. L. Ferreira, C. M. B. Monteiro, J. M. F. dos Santos, S. Biagi, R. Veenhof, J. F. C. A. Veloso
| Journal of Instrumentation 7 (2012) P09006
| doi: 10.1088/1748-0221/7/09/P09006
* | *NEXT-100 Technical Design Report (TDR). Executive Summary*
| `The Next Collaboration `_
| Journal of Instrumentation 7 (2012) T06001
| doi: 10.1088/1748-0221/7/06/T06001
* | *SiPMs coated with TPB: coating protocol and characterization for NEXT*
| `The Next Collaboration `_
| Journal of Instrumentation 7 (2012) P02010
| doi: 10.1088/1748-0221/7/02/P02010
* | *THGEM-based detectors for sampling elements in DHCAL: laboratory and beam evaluation*
| L. Arazi, H. Natal da Luz, D. Freytag, M. Pitt, C. D. R. Azevedo, A. Rubin, M. Cortesi, D. S. Covita, C. A. B. Oliveira, E. Oliveri, R. Herbst, S. Park, J. Yu, R. Chechik, J. M. F. dos Santos, M. Breidenbach, G. Haller, A. White, J. F. C. A. Veloso and A. Breskin
| Journal of Instrumentation 7 (2012) C05011
| doi: 10.1088/1748-0221/7/05/C05011
* | *Multi-slice Quantum Computed Tomography System using a MHSP*
| L. F. N. D. Carramate, C. A. B. Oliveira, A. L. M. Silva, A. M. da Silva, J. M. F. dos Santos, J. F. C. A. Veloso
| Journal of Instrumentation 7 (2012) C01106
| doi: 10.1088/1748-0221/7/01/C01106
* | *Secondary Scintillation Yield from GEM and THGEM Gaseous Electron Multipliers for direct Dark Matter search*
| C. M. B. Monteiro, L. M. P. Fernandes, J. F. C. A. Veloso, C. A. B. Oliveira, J. M. F. dos Santos
| Physics Letters B 714 (2012) 18 - 23
| doi: 10.1016/j.physletb.2012.06.066
* | *A simulation toolkit for electroluminescence assessment in rare event experiments*
| C. A. B. Oliveira, H. Schindler, R. Veenhof, S. Biagi, C. M. B. Monteiro, J. M. F. dos Santos, A. L. Ferreira, J. F. C. A. Veloso
| Physics Letters B 703 (2011) 217 - 222
| doi: 10.1016/j.physletb.2011.07.081
* | *Energy resolution studies for NEXT*
| C. A. B. Oliveira, M. Sorel, J. Martin-Albo, J. J. Gomez-Cadenas, A. L. Ferreira and J. F. C. A. Veloso
| Journal of Instrumentation 6 (2011) P05007
| doi: 10.1088/1748-0221/6/05/P05007
* | *Characterization of an energy dispersive X-ray fluorescence imaging system based on a Micropattern Gaseous Detector*
| A. L. M. Silva, C. D. R. Azevedo, C. A. B. Oliveira, J. M. F. Dos Santos, M. L. Carvalho, J. F. C. A. Veloso
| Spectrochimica Acta B 66 (2011) 308 -- 313
| doi: 10.1016/j.sab.2011.03.002
* | *Energy weighting technique in Quantum Computed Tomography using a MPGD*
| L. F. N. D. Carramate, C. A. B. Oliveira, A. L. M. Silva, A. M. da Silva, J. M. F. dos Santos, J. F. C. A. Veloso
| Journal of Instrumentation 6 (2011) C02002
| doi: 10.1088/1748-0221/6/02/C02002
* | *Energy Weighting in a 2D-MHSP x-ray Single Photon Detector*
| C. A. B. Oliveira, C. A. Santos, A. L. M. Silva, J.M.F. dos Santos, J.F.C.A. Veloso
| IEEE Transactions on Nuclear Science 57 (2010) 938 -- 94
| doi: 10.1109/TNS.2010.2044806
* | *Energy resolved X-ray fluorescence imaging based on a micropattern gas detector*
| J. F. C. A. Veloso, A. L. M. Silva, C. A. B. Oliveira, A. L. Gouvea, C. D. R. Azevedo, H. Natal da Luz, J.M.F. dos Santos
| Spectrochimica Acta B 65 (2010) 241 -- 247
| doi: 10.1016/j.sab.2010.03.006
* | *EDXRF imaging of Pb in glazed ceramics using a micropattern gas detector*
| A. L. M. Silva, C. A. B. Oliveira, A. L. Gouvea, J. M. F. dos Santos, M. L. Carvalho, J. F. C. A. Veloso
| Analytical \& Bioanalytical Chemistry 395 (2009) 2073 -- 2080
| doi: 10.1007/s00216-009-3196-8
* | *Gas VUV Photosensors Operating Face-to-Face*
| J. F. C. A. Veloso, C. D. R. Azevedo, C. A. B. Oliveira, H. N. da Luz, A.L. Ferreira, J. M. F. dos Santos
| Nuclear Intruments and Methods in Physics Research A 610 (2009) 238 -- 241
| doi: 10.1016/j.nima.2009.05.146
* | *Single photon counting x-ray imaging system using a Micro Hole and Strip Plate*
| H. N. da Luz, C. A. B. Oliveira, C. D. R. Azevedo, J. A. Mir, J. M. F. dos Santos, J. F. C. A. Veloso
| IEEE Transactions on Nuclear Science 55 (2008) 2341 -- 2345
| doi: 10.1109/TNS.2008.2001423
* | *High-Rate Operation of the Micro-Hole \& Strip Plate Gas Detector*
| J. F. C. A. Veloso, C. C. Caldas, C. A. B. Oliveira, C. D. R. Azevedo, J. M. F. dos Santos, A. Breskin, R. Chechik
| Nuclear Instruments and Methods A 580 (2007) 362 -- 365
| doi: 10.1016/j.nima.2007.05.179
Proceedings of scientific meetings
----------------------------------
* | *Measurement of scintillation and ionization yield with high-pressure gaseous mixtures of Xe and TMA for improved neutrinoless double beta decay and dark matter searches*
| Y. Nakajima, A. Goldschmidt, H. S. Matis, D. Nygren, C. A. B. Oliveira, J. Renner
| 7th Symposium on large TPCs for low energy rare event detection, Paris, France, Dec 15 - 17 2014
| Journal of Physics: Conference Series 650 (2015) 012012
| doi:10.1088/1742-6596/650/1/012012
* | *Measurements of charge and light in Pure High Pressure Xe towards the study of Xe+TMA mixtures with Dark Matter directionality sensitivity and supra-intrinsic energy resolution for neutrino-less double beta decay searches*
| C. A. B. Oliveira, V. M. Gehman, A. Goldschmidt, D. Nygren, J. Renner
| 13th International Conference on Topics in Astroparticle and Underground Physics, Asilomar, CA, USA, Sep 8 - 13 2013
| Physics Procedia 61 (2015) 742
| doi:10.1016/j.phpro.2014.12.093
* | *Results from the NEXT prototypes*
| C. A. B. Oliveira, on behalf of `The Next Collaboration `_
| 6th Symposium on large TPCs for low energy rare event detection, Paris, France, Dec 17 --19 2012.
| Journal of Physics: Conference Series 460 (2013) 012011
| doi:10.1088/1742-6596/460/1/012011
* | *The NEXT experiment at the LSC*
| C. A. B. Oliveira, A. L. Ferreira and J. F. C. A. Veloso, J. Mart\'{in-Albo, M. Sorel, J. J. G\'{omez-Cadenas, on behalf of `The Next Collaboration `_
| 13th ICATPP Conference on Astroparticle, Particle, Space Physics and Detectors for Physics Applications, Villa Olmo, Como, Italy, Oct 3 -- 7 2011
| Astroparticle, Particle, Space Physics and Detectors for Physics Applications, Chapter 58, 377 - 382, World Scientific
| doi: 10.1142/9789814405072\_0055
* | *Energy Weighting in a 2D-MHSP x-ray Single Photon Detector*
| C. A. B. Oliveira, C. A. Santos, A. L. M. Silva, J. M. F. Dos Santos, J. F. C. A. Veloso
| 2008 IEEE NSS/MIC, Dresden, Germany, Oct 19 - 25 2008
| IEEE NSS/MIC Record (2008) 3986 -- 3990
| doi:10.1109/NSSMIC.2008.4774156
* | *Simulation Method for Position and Energy Corrections in Scintillation Detectors*
| C. A. B. Oliveira, C. D. R. Azevedo, A. L. Ferreira, J. F. C. A. Veloso
| WMISI: Workshop on Medical Instrumentation Signal and Imaging, Aveiro, Portugal, Apr 11 - 12 2007
| http://biblioteca.sinbad.ua.pt/Revistas/2007000304/019